PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CAMTA
Protein Properties Length: 839aa    MW: 94160.4 Da    PI: 6.3176
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695910PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-8658PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.23.2e-53131283117
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e + rwlk+ e++ iL+n+++ +l+ e++++p+sgsl+L++rk++r+frkDG+sw++kkdgk++ E+he+LKvg+vevl+cyYah+eenp+fqrr+yw+
  Lsa008785  13 EEaQVRWLKAGEVLFILQNYDEKQLSREAPQQPPSGSLFLFDRKVLRFFRKDGHSWRRKKDGKAIGEAHERLKVGNVEVLNCYYAHGEENPNFQRRSYWM 112
                45599*********************************************************************************************** PP

       CG-1 102 Leeelekivlvhylev 117
                L++++e+ivlvhy+++
  Lsa008785 113 LNSAKEHIVLVHYRDT 128
                *************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.4858134IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7211129IPR005559CG-1 DNA-binding domain
PfamPF038595.9E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-6314400IPR013783Immunoglobulin-like fold
CDDcd001020.0012318400No hitNo description
PfamPF018331.4E-6318389IPR002909IPT domain
SuperFamilySSF812967.8E-16318399IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.4E-14487587IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-15491587IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714493585IPR020683Ankyrin repeat-containing domain
CDDcd002041.08E-13513585No hitNo description
PfamPF127962.5E-7514586IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0028526558IPR002110Ankyrin repeat
PROSITE profilePS5008810.232526558IPR002110Ankyrin repeat
SMARTSM000159.5638660IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242639668IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.82E-6645661IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.81692714IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84693722IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.82E-6693744IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.013694713IPR000048IQ motif, EF-hand binding site
SMARTSM000150.17715737IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.011717740IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4718737IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MTTSGYDIRD ILEEAQVRWL KAGEVLFILQ NYDEKQLSRE APQQPPSGSL FLFDRKVLRF  60
FRKDGHSWRR KKDGKAIGEA HERLKVGNVE VLNCYYAHGE ENPNFQRRSY WMLNSAKEHI  120
VLVHYRDTSQ TTPGRNIAGP LSAFSPGTSS NLVQSSNSYA SQLTSNETNG HYYENTSSPS  180
CIEVSSDSIT KAKGISHEIL MKTETVTGSP NSEVDQALKR IEEQLSLDEG HLEEIDALYN  240
DNENSHDFGL TMDEQSYDNI FKGYQASMFL PHSLEDLKFS SNKYGSDSDY STMFDQEHSQ  300
TPPGPDSSLT IAQEQKFTIR EISPEWGYAN ESTKVFFIGT FTCDSWTCMF GDTEVPVQII  360
QEGVICCQAP PCLLPGKVTV SITSNNQEPH TEIKEFEYRD KPSSYKHNSS ETESHKSLEE  420
LLLLVRLVQM LQFDQKGEST ETEDSWSQLI EALLDGSLAS SNAMEWILEQ LLKDKLHQWL  480
SSRLKNNSAL SKREQGMIHM VSGLGFCWAL SPILNSGVSI NFRDINGWTA LHWAARFGRE  540
KMVAALLACG AYAGAITDPS KQDPTGKTPA SIASACGHKG LAGYLSEMTL TGHLTSLKLQ  600
ETEVSRTCDD VEAERTVNSL GVHDDHIYLK DTLSAVRNAT QAAARIQSAF RAHSFRRRQQ  660
KESEGSEDEY GLLSSDIEGL SKGSKLTFGN AHDHHAALSI QKKYRGWKGR KDFVSFRQKI  720
VKIQALVRGH QVRKSYKVIC WAVGIVEKVI LRWRRKGAGL RGFRQGSAEE DEDDDEDVVK  780
AFRKEKVDVA IGEAVARVLA MVDSKPARQQ YHRMLQNHRQ AMAEHRGFGG GVASMEIDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831652.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A022RQP30.0A0A022RQP3_ERYGU; Uncharacterized protein
STRINGPOPTR_0003s16910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-172Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains